Texas Xenopus Genome Project/Species Identification
From Marcotte Lab
How to select
- Download X. tropicalis mRNA sequences from XenBase (Nov. 27, 2009 version).
- xdata:ID/XENTR_mRNA.xenbase20091127.fasta.gz 17 MB, gzipped.
- Download CHORI-216 sequences (from XenBase) and CHORI-219 sequences (from NCBI GenBank).
- xdata:ID/XENTR_CH216.fasta.gz 1.2 MB, gzipped. (CHORI-216 sequences. 160 BAC sequences from X. tropicalis genome)
- xdata:ID/XENLA_CH219.fasta.gz 6.5 MB, gzipped. (CHORI-219 sequences. 29 BAC sequences from X. laeves genome)
- Run BLAT (with default option) to known CHORI BAC sequences.
- xdata:ID/XENTR_mRNA.XENLA_CH219.blat_pslx.gz 1.2 MB, gzipped.
- xdata:XENTR_mRNA.XENTR_CH216.blat_pslx.gz 20 MB, gzipped.