PSEAE CF.2010
From Marcotte Lab
Web supplement for 'Huse HK, Kwon T, Zlosnik JEA, Speert DP, Marcotte EM, Whiteley M, Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo, mBIO, :in press (2010) PubMed '
Contents |
Supplement Tables
- Table S1. Strains
- Table S2. P. aeruginosa orthologs
- Table S3. Affymetrix microarray annotation
- Table S4. P. aeruginosa annotation
- Table S5. Differentially expressed genes between progenitors
- Table S6. Differentially expressed genes within isogenic groups (compared to each progenitor/first strain).
- Table S7. Differentially expressed genes between isogenic groups.
- Table S8. Functional enrichment data for Table S7
- Table S9. Functional enrichment data for Table S6
Microarray Data
CEL files
- http://www.marcottelab.org/users/taejoon/PSEAE_CF/microarray/GSE21966_CEL.zip
- You can also download it from http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21966 (NCBI GEO)
Gzipped TXT files
- RAW data, before pre-processing
- RMA pre-processing, PM corrected
- RMA pre-processing, Quantile normalized
- RMA pre-processing, ExpressSet
- MAS5 pre-processing, ExpressSet
- (MAS5 pre-processing, P/M/A calls