Difference between revisions of "CH391L/UTpond"

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(Analysis tool)
(Number of reads)
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* V3BC24:  562,803 (F3), 525,892 (F5),  588,304 (raw)
 
* V3BC24:  562,803 (F3), 525,892 (F5),  588,304 (raw)
 
* V3BC25:  569,125 (F3), 531,015 (F5),  595,064 (raw)
 
* V3BC25:  569,125 (F3), 531,015 (F5),  595,064 (raw)
 +
You can download CSFASTA files from [http://www.marcottelab.org/users/CH391L/UTpond/raw/ here].
  
 
== Databases ==
 
== Databases ==

Revision as of 16:32, 28 March 2011

Number of reads

  • V3BC21: 213,419 (F3), 199,158 (F5), 223,100 (raw)
  • V3BC22: 634,431 (F3), 595,251 (F5), 661,120 (raw)
  • V3BC23: 1,015,471 (F3), 951,357 (F5), 1,060,308 (raw)
  • V3BC24: 562,803 (F3), 525,892 (F5), 588,304 (raw)
  • V3BC25: 569,125 (F3), 531,015 (F5), 595,064 (raw)

You can download CSFASTA files from here.

Databases

  • Prokaryotes:
  • Eukaryotes:
  • Viruses:


Analysis tool

$ gsmapper-cs foobar.csfasta db.fasta -E -N 4 -o 1000 -h 80% >foobar.gsmapper_sam 2>foobar.gsmapper_log