Difference between revisions of "TXGP RNAseq assembly"
From Marcotte Lab
(Created page with "= Dataset for RNA-seq assembly = {| class="wikitable" style="text-align: center;" !Dataset !Contributor !Samples !Reads !Assembled transcripts(raw) !''X. laevis'' genes !''X. tr...") |
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|Amin201106_XENLA | |Amin201106_XENLA | ||
|Nirav Amin, Frank Conlon (UNC) | |Nirav Amin, Frank Conlon (UNC) | ||
| − | |2 (no rep) | + | |2 <br/>(no rep) |
| − | |28~33M (75bp, single) | + | |28~33M <br/>(75bp, single) |
|591,321 | |591,321 | ||
|13,523 | |13,523 | ||
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|Park201106_XENLA | |Park201106_XENLA | ||
|Tae Joo Park, Richard Harland (UC Berkeley) | |Tae Joo Park, Richard Harland (UC Berkeley) | ||
| − | |5 (no rep) | + | |5 <br/>(no rep) |
|.. | |.. | ||
|.. | |.. | ||
Revision as of 12:02, 15 March 2012
Dataset for RNA-seq assembly
| Dataset | Contributor | Samples | Reads | Assembled transcripts(raw) | X. laevis genes | X. tropicalis genes | H. sapiens genes |
|---|---|---|---|---|---|---|---|
| Amin201106_XENLA | Nirav Amin, Frank Conlon (UNC) | 2 (no rep) |
28~33M (75bp, single) |
591,321 | 13,523 | 10,225 | 11,540 |
| Park201106_XENLA | Tae Joo Park, Richard Harland (UC Berkeley) | 5 (no rep) |
.. | .. | .. | .. | .. |
| TXGP201107_XENLA | TXGP | 2 (1 x 2 rep) | .. | .. | .. | .. | .. |
| Chung201110_XENLA | Meii Chung, John Wallingford (UT Austin) | 4 (2 x 2 rep) | .. | .. | .. | .. | .. |
| Quigley201112_XENLA | Ian Quigley, Christopher R. Kintner (Salk Institute) | 9 (unknown rep) | .. | .. | .. | .. | .. |
| Jarikji201201_XENLA | Zeina Jarikji, Marko Horb (MBL) | 15 (5 x 3 rep) | .. | .. | .. | .. | .. |
| TeperekTkacz201202_XENLA | Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge) | 1 (no rep) | .. | .. | .. | .. | .. |
