Difference between revisions of "TXGP RNAseq assembly"

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(Dataset for RNA-seq assembly)
(Dataset for RNA-seq assembly)
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|TeperekTkacz201202_XENLA
 
|TeperekTkacz201202_XENLA
|Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge)
+
|Marta Teperek-Tkacz, John Gurdon (Gurdon Institute)
 
|1<br/>(no rep)
 
|1<br/>(no rep)
 
|..
 
|..

Revision as of 12:04, 15 March 2012

Dataset for RNA-seq assembly

Dataset Contributor Samples Reads Assembled transcripts(raw) X. laevis genes X. tropicalis genes H. sapiens genes
Amin201106_XENLA Nirav Amin, Frank Conlon (UNC) 2
(no rep)
28~33M
(75bp, single)
591,321 13,523 10,225 11,540
Park201106_XENLA Tae Joo Park, Richard Harland (UC Berkeley) 5
(no rep)
.. .. .. .. ..
TXGP201107_XENLA TXGP 2
(1x2 rep)
.. .. .. .. ..
Chung201110_XENLA Meii Chung, John Wallingford (UT Austin) 4
(2x2 rep)
.. .. .. .. ..
Quigley201112_XENLA Ian Quigley, Christopher R. Kintner (Salk Institute) 9
(unknown rep)
.. .. .. .. ..
Jarikji201201_XENLA Zeina Jarikji, Marko Horb (MBL) 15
(5x3 rep)
.. .. .. .. ..
TeperekTkacz201202_XENLA Marta Teperek-Tkacz, John Gurdon (Gurdon Institute) 1
(no rep)
.. .. .. .. ..