TXGP RNAseq assembly

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Dataset for RNA-seq assembly

Dataset Contributor Samples Reads Assembled transcripts(raw) X. laevis genes X. tropicalis genes H. sapiens genes
Amin201106_XENLA Nirav Amin, Frank Conlon (UNC) 2
(no rep)
28~33M
(75bp, single)
591,321 13,523 10,225 11,540
Park201106_XENLA Tae Joo Park, Richard Harland (UC Berkeley) 5
(no rep)
.. .. .. .. ..
TXGP201107_XENLA TXGP 2 (1 x 2 rep) .. .. .. .. ..
Chung201110_XENLA Meii Chung, John Wallingford (UT Austin) 4 (2 x 2 rep) .. .. .. .. ..
Quigley201112_XENLA Ian Quigley, Christopher R. Kintner (Salk Institute) 9 (unknown rep) .. .. .. .. ..
Jarikji201201_XENLA Zeina Jarikji, Marko Horb (MBL) 15 (5 x 3 rep) .. .. .. .. ..
TeperekTkacz201202_XENLA Marta Teperek-Tkacz, John Gurdon (Gurdon Institute/Cambridge) 1 (no rep) .. .. .. .. ..