Revision as of 13:31, 8 May 2013

Genome browser

• XenBase - JGIv6
  • http://www.xenbase.org/fgb2/gbrowse/Xenopus_laevis_6_0/?source=Xenopus_laevis_6_0
• NIMR, UK (Mike Gilchrist) - JGIv5(2011oct), JGIv6a(2012nov)
  • http://genomes.nimr.mrc.ac.uk/cgi-bin/hgGateway
• NIG, Japan (Asao Fujiyama & Masanori Taira) - NIGv2
  • http://xenopus.lab.nig.ac.jp/cgi-bin/gb2/gbrowse/xl_v2soap/

Genome version

• JGIv1
• JGIv5
• JGIv6
• JGIv6a
• JGIv7a
• JGIv7b

• NIGv1
• NIGv1ap
• NIGv1m
• NIGv2
• NIGv2c

Data Summary

Whole genome shotgun sequencing, JGI/UC Berkeley, USA

• Illumina mate-pair

Whole genome shotgun sequencing, NIG/U Tokyo, Japan

• Illumina mate-pair

Whole genome shotgun sequencing, UT Austin, USA

• SOLiD mate-pair

BAC-end sequencing, NIG/U Tokyo, Japan

BAC full sequencing, NIG/U Tokyo, Japan

BAC shotgun sequencing, UT Austin, USA

FISH, NIG/U Tokyo, Japan