Difference between revisions of "XENLA Genome"

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(Genome version)
(Genome version)
Line 30: Line 30:
 
|NIGv1
 
|NIGv1
 
|2012 Nov
 
|2012 Nov
 +
|2.88 Gbp
 +
|0.34 Mbp
 +
|14,260
 +
|Original name is 'xl.v1soap'; Internal Use Only.
 
|-
 
|-
 
|NIGv1ap
 
|NIGv1ap
 
|2012 Nov
 
|2012 Nov
 +
|3.27 Gbp
 +
|0.17 Mbp
 +
|39,283
 +
|Original name is 'xl.v3ap'(AllPath?); Internal Use Only.
 
|-
 
|-
 
|NIGv1m
 
|NIGv1m
 
|2012 Nov.
 
|2012 Nov.
 +
|2.84 Gbp
 +
|0.28 Mbp
 +
|82,132
 +
|Original name is 'xl.v5m'; Internal Use Only.
 
|-
 
|-
 
|NIGv2
 
|NIGv2
Line 48: Line 60:
 
|1.15 Mbp
 
|1.15 Mbp
 
|5,714
 
|5,714
 +
|JGI7;Internal Use Only
 
|-
 
|-
 
|JGIv7b
 
|JGIv7b
Line 54: Line 67:
 
|3.49 Mbp
 
|3.49 Mbp
 
|2,598
 
|2,598
 +
|JGI7.2;Internal Use Only
 
|}
 
|}
  

Revision as of 14:04, 8 May 2013

Contents

Genome browser

Genome version

Name Release Date Concat. Length (bp) N50 (bp) Scaffolds > 10kbp Remarks
JGIv1 2009
JGIv5 2009 Oct.
JGIv6 2010
JGIv6a 2010 oct
NIGv1 2012 Nov 2.88 Gbp 0.34 Mbp 14,260 Original name is 'xl.v1soap'; Internal Use Only.
NIGv1ap 2012 Nov 3.27 Gbp 0.17 Mbp 39,283 Original name is 'xl.v3ap'(AllPath?); Internal Use Only.
NIGv1m 2012 Nov. 2.84 Gbp 0.28 Mbp 82,132 Original name is 'xl.v5m'; Internal Use Only.
NIGv2 2013 Feb.
NIGv2c 2013 Feb.
JGIv7a 2013 Mar. 2.72 Gbp 1.15 Mbp 5,714 JGI7;Internal Use Only
JGIv7b 2013 May 2.78 Gbp 3.49 Mbp 2,598 JGI7.2;Internal Use Only

Data Summary

Whole genome shotgun sequencing, JGI/UC Berkeley, USA

  • Illumina mate-pair

Whole genome shotgun sequencing, NIG/U Tokyo, Japan

  • Illumina mate-pair

Whole genome shotgun sequencing, UT Austin, USA

  • SOLiD mate-pair

BAC-end sequencing, NIG/U Tokyo, Japan

BAC full sequencing, NIG/U Tokyo, Japan

BAC shotgun sequencing, UT Austin, USA

FISH, NIG/U Tokyo, Japan